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利用picard对参考基因组构建dict文件

2022-04-27 10:02:23 作者：互联网

1、方式1

root@DESKTOP-1N42TVH:/home/test/test2# ls
Arabidopsis_thaliana.TAIR10.dna.toplevel.fa
root@DESKTOP-1N42TVH:/home/test/test2# java -jar /home/software/picard/build/libs/picard.jar CreateSequenceDictionary R=Arabidopsis_thaliana.TAIR10.dna.toplevel.fa O=Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.dict

root@DESKTOP-1N42TVH:/home/test/test2# ls
Arabidopsis_thaliana.TAIR10.dna.toplevel.fa  Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.dict

2、方式2：

[root@8ec9dd73f438  09:49:52 /work/my_reseq/ref/test2]# ls
Arabidopsis_thaliana.TAIR10.dna.toplevel.fa
[root@8ec9dd73f438  09:49:53 /work/my_reseq/ref/test2]# picard CreateSequenceDictionary R=Arabidopsis_thaliana.TAIR10.dna.toplevel.fa O=Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.dict

[root@8ec9dd73f438  09:50:06 /work/my_reseq/ref/test2]# ls
Arabidopsis_thaliana.TAIR10.dna.toplevel.fa  Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.dict

标签：dna,fa,picard,基因组,TAIR10,toplevel,Arabidopsis,dict,thaliana
来源： https://www.cnblogs.com/liujiaxin2018/p/16197719.html